General Information
Symbol
Dmel\Dscam1-RBX
Species
D. melanogaster
Annotation Symbol
CG17800-RBX
FlyBase ID
FBtr0306767
Feature type
Associated gene
Evidence Rank
Length (nt)
7764
Evidence Score
Genomic Location
cDNA Clones Consistent with the Transcript ( 47 )
cDNA Clones, Fully Sequenced
Exact Match
    Contained within the annotated transcript, internally consistent
      End(s) extend beyond the annotated transcript, internally consistent
        cDNA Clones, End Sequence Only (ESTs)
        End(s) extend beyond the annotated transcript, internally consistent
        Sequence
        AGAACCGGATTTCAGCGCTAGTCGGCGAATCGCGAGAGCGTGCGAGTATTTGTGTGTGCGTGTGAGCGTTTGTTTTGGGA
        CACCGATACGGATACGGGTACGGATAGACGGATATACGGCAGCGGTACGCGATTAGCAATCCGCCAACCGGTTGCAGCGG
        TGCTAGTGCACCACCCTACAAAAAAGTGAATAATAGTATGCAAAGTATCTGAAAGATAGTCAAGAGCAGAGCAAAGTATC
        TGTGTTTGTGTGTGCCGTGCTTTTGTGCGGAGTCGCCACCCCCGTGGATTAGTGGCACCCTGCTGCAAATAGCCCACCAC
        TCTCACAAGTGTGTGTGTGTGAGTGTTAACAATTAATCGCATTTAAAAAACAATTTGGCCAGCCGCAGTAACAATAACGA
        TAATTCGGACGTGCCAAGGGTGCTTTTCAGTGGATTTTTGCGTAAAATCGATAGTCAGATAGACCCGCTCTCTACTGCCA
        ACTTCACACAACCCGCTCAGCGGAAACACGGCATACGAAATGAATATGCCCAACGAACGCCTCAAATGGCTAATGCTGTT
        CGCAGCTGTTGCCCTCATTGCTTGTGGTAGTCAGACCCTAGCTGCCAATCCCCCAGATGCCGACCAAAAAGGACCCGTCT
        TCCTCAAGGAACCCACCAACCGCATTGACTTCTCCAACTCCACGGGCGCAGAGATCGAGTGCAAGGCCAGCGGCAATCCC
        ATGCCCGAGATTATTTGGATCAGGAGCGACGGTACCGCCGTGGGTGATGTGCCCGGATTGCGTCAGATCTCATCCGACGG
        CAAGCTGGTCTTCCCTCCATTCCGCGCCGAGGACTACCGCCAGGAGGTCCATGCCCAGGTGTACGCCTGCCTGGCCCGCA
        ACCAGTTCGGATCCATTATCTCCCGGGACGTCCATGTGCGAGCCGTCGTTTCCCAACACTACGAAGAAGATATACACAAG
        GCATTTGTCATCCGCGGCAATTCCGCCATATTGAAATGCGATATACCGTCGTTTGTAGCCGATTTCGTGAATGTTATATC
        CTGGCATAGTGACGAGAAAGAGAATTTCTATCCAGGCACTGAATATGATGGAAAGTACCTGGTATTGCCCTCTGGAGAGC
        TGCACATCCGTGAGGTTGGACCCGAGGACGGATACAAGAGCTACCAGTGCCGAACCAAACATCGTCTGACCGGAGAAACC
        CGATTAAGTGCCACAAAAGGACGATTGGTCATCACAGAACCGGTCGGAAGTGTAAGTCCCCAGCTCAGTGGCAATGGTAA
        TCAGGAGCACATAACTCTCACTCGAGTTCCCAAGATGGGTAGCGTTACACTGATGTGTCCGGCTCAAGCCTATCCAGTGC
        CCTTCTTTAGATGGTACAAGTTCATCGAAGGAACAACCCGTAAACAAGCTGTGGTGCTAAATGACCGTGTGAAGCAGGTC
        TCTGGTACTCTCATTATTAAGGACGCAGTAGTCGAGGACTCCGGAAAATACCTGTGCGTGGTGAACAATTCCGTGGGAGG
        CGAAAGCGTTGAGACTGTGCTTACCGTCACTGCCCCCCTATCCGCTAAGATCGATCCTCCCACACAGACAGTTGACTTCG
        GACGCCCCGCCGTATTCACTTGCCAGTACACTGGAAATCCCATCAAGACCGTTAGCTGGATGAAGGACGGCAAGGCTATC
        GGACACAGCGAACCCGTGCTGCGCATCGAATCCGTGAAGAAGGAGGACAAGGGCATGTACCAGTGCTTCGTAAGAAACGA
        CCAGGAATCGGCGGAGGCGAGTGCTGAGCTGAAGCTCGGAGGCCGTTTCGATCCCCCCGTCATCCGACAGGCCTTCCAGG
        AAGAGACCATGGAACCCGGACCAAGTGTATTCCTCAAGTGCGTCGCCGGCGGAAACCCCACGCCCGAAATTTCCTGGGAA
        CTCGACGGCAAGAAAATCGCCAACAACGATCGCTATCAGGTCGGACAGTATGTGACGGTCAACGGAGATGTGGTTTCCTA
        TCTGAACATAACCTCGGTCCACGCCAACGATGGCGGTCTCTACAAGTGCATAGCCAAGAGCAAAGTGGGCGTGGCCGAAC
        ACTCGGCCAAGTTGAATGTATATGGACTGCCCTACATCCGGCAAATGGAGAAGAAGGCAATTGTTGCTGGAGAAACCCTG
        ATTGTCACATGTCCTGTAGCTGGATACCCCATCGATTCGATTGTCTGGGAGCGAGATAACCGTGCCCTGCCCATCAACCG
        CAAACAGAAGGTCTTCCCCAACGGAACGCTGATTATCGAGAATGTGGAACGGAACTCAGACCAAGCGACCTACACTTGCG
        TTGCCAAGAATCAGGAAGGATACTCTGCTCGAGGATCTCTGGAAGTGCAAGTCATGGTTCTGCCCCAAATTGTGCCCTTC
        GCCTACGAGGATCTGATCAATATGGGCGACTCGATAGATTTGTTTTGCCAAATCCAAAAAGGCGACCGTCCCATCAAGGT
        GCACTGGAGTTTCGAGCGGAGCGCTGGAGACTACGGCTTTGATCAGGTGCAGCCCCAGATGCGCACGAATCGCATTAGCG
        AGAAGACGAGCATGATCTCCATTCCCAGTGCCAGTCCTGCCCACACCGGCCGGATACCTGTATAGCCAGTAATAAGGCTG
        GAACTACAACATATAGCGTTGACCTGACAGTGAACGTACCTCCCAGATGGATCCTCGAGCCCACCGATAAGGCCTTCGCC
        CAGGGATCCGATGCCAAGGTTGAATGCAAGGCTGATGGCTTCCCCAAACCCCAAGTTACATGGAAGAAAGCAGTTGGCGA
        CACCCCCGGAGAGTACAAGGATCTAAAGAAGAGCGACAACATCCGCGTGGAAGAGGGCACTCTGCATGTCGACAACATCC
        AAAAGACCAACGAGGGCTACTATCTGTGCGAGGCTATCAATGGAATAGGCTCCGGCCTCTCGGCTGTGATTATGATCAGC
        GTTCAGGCCCCTCCAGAGTTCACGGAGAAGCTGCGCAACCAGACCGCCCGACGAGGAGAACCCGCCGTACTCCAGTGCGA
        GGCGAAGGGCGAGAAGCCCATTGGCATCTTGTGGAACATGAACAACATGCGACTGGACCCAAAGAACGACAATCGGTACA
        CCATTCGTGAGGAGATCCTTTCCACCGGAGTTATGTCCAGTCTGTCGATCAAGCGCACCGAGAGATCCGACTCCGCCCTA
        TTCACCTGTGTCGCCACTAATGCCTTTGGATCCGATGACGCCAGCATAAATATGATTGTCCAGGAAGTTCCGGAGATGCC
        ATATGCTTTGAAGGTACTCGACAAATCCGGACGTTCCGTGCAGCTGAGCTGGGCGCAACCCTACGATGGCAACTCCCCTC
        TGGACAGGTACATCATTGAGTTTAAGCGTTCTCGTGCCTCCTGGAGCGAAATTGATCGCGTCATCGTGCCCGGACACACC
        ACAGAAGCCCAAGTGCAGAAGCTCAGCCCCGCCACCACCTACAACATTCGCATCGTGGCCGAAAACGCCATCGGCACATC
        CCAATCCTCTGAAGCGGTCACTATCATCACAGCCGAAGAAGCACCCTCCGGCAAGCCCCAGAACATCAAGGTAGAACCCG
        TGAACCAGACCACCATGCGCGTCACCTGGAAGCCACCACCACGCACCGAGTGGAACGGAGAGATCCTGGGCTACTACGTC
        GGCTACAAGCTATCCAACACTAACTCGTCCTACGTTTTCGAGACCATCAACTTCATCACCGAGGAGGGCAAGGAGCACAA
        CCTGGAACTGCAGAACCTGCGCGTGTACACCCAGTACTCCGTGGTGATCCAGGCCTTCAACAAGATCGGAGCTGGTCCAC
        TGAGCGAAGAGGAGAAACAATTCACGGCCGAGGGAACGCCCAGCCAGCCACCCAGTGACACCGCCTGCACCACCTTAACT
        TCGCAGACCATTCGCGTCGGATGGGTGAGCCCACCCCTGGAATCCGCCAACGGAGTGATCAAGACCTATAAGGTTGTCTA
        TGCCCCCAGTGACGAGTGGTATGACGAGACCAAGCGACACTATAAGAAGACGGCCTCCTCCGACACAGTCCTCCATGGCT
        TAAAGAAGTACACCAACTACACAATGCAGGTCCTGGCCACAACAGCCGGAGGCGATGGCGTCCGCAGCGTTCCCATCCAC
        TGCCAAACCGAACCCGATGTTCCCGAAGCACCCACTGATGTAAAGGCTCTTGTTATGGGTAACGCCGCTATCCTGGTATC
        CTGGCGCCCACCAGCACAGCCAAACGGCATTATCACCCAGTACACCGTGTACTCCAAGGCCGAAGGCGCTGAGACTGAGA
        CAAAGACCCAGAAGGTTCCCCACTACCAGATGAGTTTCGAGGCCACCGAACTGGAGAAGAACAAGCCCTACGAGTTCTGG
        GTGACAGCTAGCACCACCATTGGCGAAGGCCAGCAGTCTAAGAGCATAGTGGCCATGCCCAGCGACCAGGTGCCCGCCAA
        GATCGCCTCCTTCGACGACACCTTCACTGCCACCTTCAAGGAGGACGCCAAGATGCCCTGCCTGGCCGTTGGAGCCCCCC
        AACCCGAGATCACATGGAAGATCAAGGGCGTCGAATTCAGTGCCAACGATCGCATGCGCGTCCTCCCCGACGGATCGCTG
        CTGATCAAGTCGGTAAATCGCCAGGATGCCGGAGACTACTCCTGCCACGCCGAGAACTCGATTGCTAAGGACTCCATCAC
        GCACAAACTGATTGTTCTGGCACCACCACAATCGCCCCACGTCACCCTCTCGGCAACCACCACTGATGCCCTGACTGTAA
        AGTTGAAGCCCCATGAGGGAGACACTGCTCCTCTGCATGGATACACCCTGCACTACAAGCCAGAATTCGGAGAATGGGAA
        ACATCGGAAGTGTCTGTCGACTCACAGAAGCACAACATCGAAGGTCTCTTGTGCGGCTCCCGCTATCAGGTCTATGCCAC
        AGGATTCAATAACATTGGAGCTGGCGAAGCTTCTGACATTTTGAACACCCGGACCAAGGGACAGAAGCCCAAGCTGCCCG
        AGAAACCTCGCTTCATTGAAGTGTCGTCCAACTCGGTGTCCCTGCACTTCAAGGCCTGGAAAGATGGAGGATGCCCCATG
        TCGCACTTTGTGGTGGAGAGCAAGAAGCGCGATCAAATTGAGTGGAACCAAATTTCGAACAACGTGAAGCCCGATAACAA
        CTACGTGGTTTTGGACCTGGAACCCGCCACCTGGTACAACCTCCGCATCACTGCCCACAACTCGGCTGGCTTCACTGTGG
        CCGAATACGACTTTGCCACCTTAACCGTTACCGGAGGCACCATTGCGCCCCTGGACGACGGATCCGGCCACGGCAACGTG
        CACACCCGCATCCGCCTGCCCGCCTGGATGCCCGAGTGGCTCGATCTCAACTTCATGGTGCCCCTAATTGCCACCGTGGT
        CGTGGTGGCGGTGGGCATCTGCGTGGTGTGCGTGGCCCTATCTCGGAGGCGAGCGGACGACATGCGCGGCGGCCAAAAGG
        ATGTGTACTACGATGTAGTTTACAATCAGACAATGGGACCCGGCGCCACCCTGGACAAGCGTCGTCCGGACCTGCGGGAT
        GAGCTCGGATACATCGCCCCGCCCAACCGGAAGCTGCCCCCCGTTCCCGGATCCAACTATAATACCTGTGACCGGATTAA
        GCGAGGCCGCGGTGGCCTCCGGTCCAACCACTCGACCTGGGACCCTCGACGCAATCCCAACCTGTACGAGGAGCTGAAGG
        CCCCGCCAGTGCCGATGCACGGCAACCATTACGGCCACGCCCACGGCAATGCCGAGTGCCACTACAGGCATCCAGGCATG
        GAAGATGAAATCTGCCCCTATGCCACGTTCCACCTGCTCGGATTCCGCGAGGAAATGGACCCTACCAAGGCCATGAACTT
        CCAGACCTTCCCCCACCAGAACGGACACGCCGGCCCAGTTCCCGGACACGCGGGCACTATGCTTCCACCAGGACATCCAG
        GACACGTGCACTCCCGCTCCGGATCGCAATCGATGCCTCGGGCCAATCGATACCAGCGAAAGAACAGCCAGGGCGGACAG
        TCCTCAATCTACACGCCAGCTCCCGAATACGATGATCCCGCCAACTGTGCCGAAGAGGACCAATATCGTCGATACACCCG
        CGTCAACTCGCAAGGCGGTAGCCTGTACTCCGGACCCGGACCCGAATACGACGATCCCGCCAACTGCGCACCCGAAGAGG
        ATCAGTACGGCTCCCAGTACGGAGGACCCTATGGACAGCCCTATGATCACTACGGTTCCCGGGGATCCATGGGACGTCGT
        AGCATCGGCTCTGCTCGCAATCCTGGCAATGGATCACCCGAGCCTCCACCACCACCACCACGCAACCACGACATGAGCAA
        CTCCTCATTCAACGACTCCAAGGAGAGTAATGAGATCTCAGAGGCAGAGTGCGATCGTGACCACGGACCACGCGGAAACT
        ACGGAGCAGTGAAGCGATCTCCACAACCGAAAGATCAGCGCACCACCGAAGAAATGCGCAAACTGATAGAAAGAAACGAA
        ACCGGCCCAAAACAACTCCAACTCCAACAAGCAAATGGCGCAGGATTCACAGCCTACGATACTATGGCAGTGTAATTTGT
        AAGCGCCCTCTGCGGCGGTGGGCGTGGCATTTTAGCTTAGTGTTTTAGGTGCATGAAGTGCGTGGGAGTTGAATGACACT
        TAGAGACACAGGACACAGATACACACAGACAGATCATCAGGACACAAGGAAAGAGATAGAGAAAGAGAGGGAGTTATATA
        CCGAATATACACGTAAAATATTCAACTACTTCGAGTAATTATAGCGAAGGAATGCAAGTTTCAAGAAACATATTTATATT
        GTCTATGCAAGCAGCAAACCAAACTTACATAAAGTATATAAGTACATTCAATGGATAACTACTATAAGAGAGTGCTGGAG
        ACACTGAAGGAAATTACTCAAGTTATTCGAGAGGAACAGAAAACGAAATCTCAAGATCAAGATCATACTTACGTATTCGA
        ACTAATTTTCAATAATGTACTTTAGTTTTAAGCGGTGTCTACCGAAATATCAGAGCAACAGCAACTGAGATGGATTCTTG
        TGTGTAAGAGGAGATGATTCGAAATCTGTTTGTGTAAACTTTTGCCATCTATGCCAGGAGCAGAAAACTCATCCTTTGCC
        TAGCCTAAGTCAAAGTCATAATATTAACTCGTCTAATTGATATATTTAGTCGTAACATATGCGTAATATGTATGATTTCT
        TCCTATGCATTTTATAATTCGTATGGACAGCGCACATTTGGAGTTTTGTTTGCGTTTTGCGTTGACTTGTGATGATTGTT
        AATTTACAGAGCTTTGTGAGTGAGTACTTACGATTGTGCTCATTACTCGCTTTGTTCTTTATTTACAGACAAGTGATTGT
        CCTATCTTAGTTCGCCCTTATTTTTAATTCAAAAATGCGCTTCCAACAGAACAAATCGAAACTGTTCAATGCACAAATCG
        CAGCCACAACAATTGAATGTATTATACAAGATCCCCAGGACACCGAAAAACCAAAACCCCTAACCCGAAACACAGATACA
        CTCAAGCACGATTTATTAAACCAATTCTGATATAGACCGTTCTGAACATGAGTTATACGCATTTGAAGCTTTAAGAGAAC
        CTGAAATTGTTTATTTCACTTCATTTGATCTATCCTAAGTTATTAGTTCATAAGTTGCTAAATATATGATTTTGATTTTA
        TTTT
        
        Other Products of this Gene
        Other Transcripts
        Name
        FlyBase ID
        Length (nt)
        FBtr0089016
        7699
        FBtr0111049
        7699
        FBtr0111050
        7744
        FBtr0111051
        7744
        FBtr0111052
        7702
        FBtr0111053
        7699
        FBtr0111054
        7744
        FBtr0111055
        7747
        FBtr0111056
        7699
        FBtr0111057
        7702
        FBtr0111058
        7741
        FBtr0111059
        7747
        FBtr0111060
        7699
        FBtr0111061
        7702
        FBtr0111102
        7762
        FBtr0111062
        7747
        FBtr0111063
        7717
        FBtr0111064
        7711
        FBtr0111101
        7753
        FBtr0111065
        7753
        FBtr0111066
        7705
        FBtr0111067
        7705
        FBtr0111068
        7753
        FBtr0111069
        7753
        FBtr0111070
        7708
        FBtr0111071
        7705
        FBtr0111072
        7756
        FBtr0111073
        7756
        FBtr0111074
        7711
        FBtr0111075
        7741
        FBtr0111076
        7741
        FBtr0111077
        7744
        FBtr0111078
        7744
        FBtr0111079
        7744
        FBtr0111080
        7756
        FBtr0306773
        7741
        FBtr0306774
        7750
        FBtr0306775
        7756
        FBtr0306776
        7708
        FBtr0306777
        7735
        FBtr0306778
        7759
        FBtr0306779
        7708
        FBtr0306780
        7708
        FBtr0306781
        7762
        FBtr0306782
        7747
        FBtr0306783
        7699
        FBtr0306784
        7699
        FBtr0306785
        7753
        FBtr0306786
        7759
        FBtr0306787
        7699
        FBtr0306768
        7710
        FBtr0306769
        7755
        FBtr0089018
        7699
        FBtr0306770
        7755
        FBtr0306771
        7710
        FBtr0306772
        7755
        FBtr0334801
        9145
        FBtr0089019
        7708
        FBtr0089020
        7717
        FBtr0111081
        7744
        FBtr0111082
        7747
        FBtr0111083
        7702
        FBtr0111084
        7702
        FBtr0111085
        7699
        FBtr0111087
        7744
        FBtr0111088
        7702
        FBtr0111089
        7744
        FBtr0111092
        7690
        FBtr0111094
        7747
        FBtr0111096
        7699
        FBtr0111097
        7708
        FBtr0111098
        7744
        FBtr0111099
        7756
        FBtr0111100
        7702
        Polypeptides
        Derived from THIS transcript
        Name
        FlyBase ID
        Length (aa)
        FBpp0297683
        2038
        Derived from OTHER transcripts
        Name
        FlyBase ID
        Length (aa)
        FBpp0088088
        2016
        FBpp0110341
        2016
        FBpp0110342
        2031
        FBpp0110343
        2031
        FBpp0110344
        2017
        FBpp0110345
        2016
        FBpp0110346
        2031
        FBpp0110347
        2032
        FBpp0110348
        2016
        FBpp0110349
        2017
        FBpp0110350
        2030
        FBpp0110351
        2032
        FBpp0110352
        2016
        FBpp0110353
        2017
        FBpp0110354
        2037
        FBpp0110355
        2032
        FBpp0110356
        2022
        FBpp0110357
        2020
        FBpp0110358
        2034
        FBpp0110359
        2034
        FBpp0110360
        2018
        FBpp0110361
        2018
        FBpp0110362
        2034
        FBpp0110363
        2034
        FBpp0110364
        2019
        FBpp0110365
        2018
        FBpp0110366
        2035
        FBpp0110367
        2035
        FBpp0110368
        2020
        FBpp0110369
        2030
        FBpp0110370
        2030
        FBpp0110371
        2031
        FBpp0110372
        2031
        FBpp0110373
        2031
        FBpp0110374
        2035
        FBpp0297689
        2030
        FBpp0297690
        2033
        FBpp0297691
        2035
        FBpp0297692
        2019
        FBpp0297693
        2028
        FBpp0297694
        2036
        FBpp0297695
        2019
        FBpp0297696
        2019
        FBpp0297697
        2037
        FBpp0297698
        2032
        FBpp0297699
        2016
        FBpp0297700
        2016
        FBpp0297701
        2034
        FBpp0297702
        2036
        FBpp0297703
        2016
        FBpp0297684
        2020
        FBpp0297685
        2035
        FBpp0088090
        2016
        FBpp0297686
        2035
        FBpp0297687
        2020
        FBpp0297688
        2035
        FBpp0306847
        1947
        FBpp0088091
        2019
        FBpp0089327
        2022
        FBpp0110375
        2031
        FBpp0110376
        2032
        FBpp0110377
        2017
        FBpp0110378
        2017
        FBpp0110379
        2016
        FBpp0110381
        2031
        FBpp0110382
        2017
        FBpp0110384
        2031
        FBpp0110387
        2013
        FBpp0110389
        2032
        FBpp0110391
        2016
        FBpp0110392
        2019
        FBpp0110393
        2031
        FBpp0110394
        2035
        FBpp0110395
        2017
        Comments
        Transcript terminates at site supported by polyadenylated cDNA.
        Transcript structure (identity of variable exons 4,6, and 9) supported by FBrf0128634 (cDNA 6). The identity of alternative exon 17 was not characterized.
        A missing base in exon 9.13 of the reference genome relative to the published sequence (GB:AF260530) leads to a frameshift and early translation termination.
        sequence_alteration_exception: variant in strain (frameshift)
        External Crossreferences and Linkouts ( 1 )
        Crossreferences
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        Synonyms and Secondary IDs (2)
        Reported As
        Symbol Synonym
        Dscam-RBX
        Dscam1-RBX
        Secondary FlyBase IDs
        • FBtr0111086
        References (0)