Dmel\1360

General Information
Symbol	Dmel\1360	Species	D.melanogaster
Name	1360 element	FlyBase ID	FBte0000559
Feature type	natural transposable element	Created / Updated	2006-12-04/2006-12-04
Sequences & Components
Complete element (bp)	4480 (Kapitonov and Jurka, 2003) 1177 (Kaminker et al., 2002) 1176
Terminal repeat (bp)	37
Reference sequence	transposon_sequence_set.embl.txt.gz
Component genes	1360\T
Sequence Accessions
	DDBJ/EMBL/GenBank Z32074 Z32073 Z31905 Z11735 Z11734 X78388 X59157 U66884 M55078 L36596 AY138841 AL031884 AJ441085 AJ000473 AF540061 AF533772
Sequence Ontology (SO)
Transposon type	terminal_inverted_repeat_element (Kaminker et al., 2002, ) transposable_element (Kaminker et al., 2002, )
Insertions & Copy Number
Copy number and comments	17 (Kapitonov and Jurka, 2003) 105 in euchromatin of Release 3 genome annotation, of which 10 are full length. (Kaminker et al., 2002) >25
Search for	All insertions of this transposon Insertions in the sequenced genome Insertions in other genomes
Target Site Duplication
Size (bp)	6
Orthologs
Curated drosophilid orthologs
Comments
	The "Dr. D" repetitive sequence (described in FBrf0048918) contains sequences of both INE-1 and 1360 transposable elements. (Locke et al., 1999) A 1360 element has been cloned and sequenced. It is flanked by short inverted repeats. The 1360 element is present in approximately 10-30 euchromatic sites and also in numerous heterochromatic sites (in the chromocenter, pericentric heterochromatin, the fourth chromosome and at the telomeres) in the D.melanogaster genome. At least 6 variant 1360 elements differing in the length of the central region have been detected. The 1360 element has ARS activity, similar to the P-element. (Kurenova et al., 1990) In situ hybridization to polytene chromosomes shows variable, strain-specific location in the euchromatic parts of the arms and heavy labelling of the 12E region of the X chromosome, chromosome bases (20A--20F, 40A--40F, 41A--41F, 80A--80C and 81F), the chromocentre and chromosome 4. (Kholodilov et al., 1988)
Other Information
Etymology

External Crossreferences
Sequence Crossreferences
	DDBJ/EMBL/GenBank Z32074 Z32073 Z31905 Z11735 Z11734 X78388 X59157 U66884 M55078 L36596 AY138841 AL031884 AJ441085 AJ000473 AF540061 AF533772
Other Crossreferences

Synonyms & Secondary IDs ( 22 )
Reported As
Symbol Synonym	1360 (Grewal and Elgin, 2007, Huisinga et al., 2007, Bhadra et al., 2007, De Lucia et al., 2005, Gunawardane et al., 2007, Mito et al., 2005, Haynes et al., 2006, Smith, 2007, Brennecke et al., 2007, Riddle et al., 2008) 1360/Hoppel (Myster et al., 2004) anon-CH(3)336 CR31011 CR31276 CR31553 Dm1360 DmHoppel (Marsano et al., 2003) Dr. D (Locke et al., 2000) EG:23E12.4 hopel (Leibovich et al., 1991, Leibovich, 1991) hoppel (Talbert and Henikoff, 2006, Kavi et al., 2005, Hodgetts, 2004, Lerat et al., 2003, Maggert and Golic, 2002, Tulin et al., 2002, Aravin et al., 2001, Wallrath, 2000, Gvozdev et al., 2000, van Steensel et al., 2001, Aravin et al., 2000, Bejarano and Gonzalez, 1999, Locke et al., 1999, Kurenova, 1994.5.6, Spradling et al., 1999, Cryderman et al., 1999, Dimitri et al., 1999, Cryderman et al., 1998, Wallrath et al., 1998, Deak et al., 1997, Kurenova et al., 1990, FlyBase, 1996-, Bhadra et al., 2007, Gvozdev et al., 2005, Steinemann and Steinemann, 2005) Hoppel (Tritto et al., 2003, Rizzon et al., 2002, Pardue and Debaryshe, 2000, Locke et al., 2000, Locke et al., 1999, Locke et al., 1998, Almeida Coelho and Sunkel, 1995, FlyBase, 1996-, Saito et al., 2006) hoppel(1360) (Zaratiegui, 2007) Hoppel-like (Marsano et al., 2003) hoppel-like (Sunkel, 1997.7.15) ProtoP (Kapitonov and Jurka, 2003) protop (Kapitonov and Jurka, 1997-) ProtoP_B (Kapitonov and Jurka, 2003) protop_b (Kapitonov and Jurka, 1997-) PROTOP B (Brennecke et al., 2007)
Name Synonym	1360 element
Secondary FlyBase IDs
	FBgn0051553 FBgn0051276 FBgn0051011 FBgn0013399 FBgn0004180 FBgn0005673 FBtp0011398
References ( 70 )

Generate a list of	All references relating to this natural transposable element ( 70 )

List References by type	Research paper ( 40 ) Supplementary material ( 1 ) Review ( 10 ) Personal communication to FlyBase ( 3 ) Abstract ( 8 ) FlyBase analysis ( 2 ) Computer file ( 2 ) Letter ( 2 ) DNA/RNA sequence record ( 2 )
Recent research papers ( 4 )
	Brennecke et al., 2007, Cell 128(6): 1089--1103 Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. [FBrf0200494] Smith, 2007, Science 316(5831): 1586--1591 [FBrf0202564] Haynes et al., 2006, Curr. Biol. 16(22): 2222--2227 Element 1360 and RNAi components contribute to HP1-dependent silencing of a pericentric reporter. [FBrf0193115] Saito et al., 2006, Genes Dev. 20(16): 2214--2222 Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. [FBrf0191820] Show all research papers ...
Recent reviews ( 3 )
	Grewal and Elgin, 2007, Nature 447(7143): 399--406 Transcription and RNA interference in the formation of heterochromatin. [FBrf0200338] Zaratiegui, 2007, Cell 128(4): 736--776 [FBrf0198665] Talbert and Henikoff, 2006, Nature Rev. Genet. 7(10): 793--803 Spreading of silent chromatin: inaction at a distance. [FBrf0194837] Show all reviews ...