Gene Dmel\1731\gag

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General Information

Symbol

Dmel\1731\gag

Species

D. melanogaster

Name

1731 element gag

Annotation symbol

Feature type

transposable_element_gene

FlyBase ID

FBgn0020768

Created / Updated

2006-08-20/2007-09-12

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

Sequence location

Summary Information

Automatically generated summary

See sections below for more information

The gene 1731 element gag is referred to in FlyBase by the symbol 1731\gag (FBgn0020768). It has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has no annotated transcripts.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q6KEU0

Maps to

Does NOT map to

Identified with

Mapped Features & Mutations

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of 1731\gag	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 2 )

For All Alleles Carried on Transgenic Constructs Show

Allele of 1731\gag	Class	Mutagen	Stocks	Known lesion
1731\gag^{a.T:Ecol\lacZ}		in vitro construct \| coding region fusion	0	Yes
1731\gag^{s.T:Ecol\lacZ}		in vitro construct \| coding region fusion	0	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 0 )

Molecular Function

CV term

Evidence

References

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

Sequence Ontology: Class of Gene

transposable_element_gene

(Haoudi et al., 1995)

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

1731\gag allele

Gene

References

External Data

Linkouts

Orthologs

Genome-wide drosophilid orthologs

Curated drosophilid orthologs

Linkouts

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 0 )

cDNA Clones ( 0 )

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Affy Oligo

Linkouts

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Encoded by

1731

Additional comments

Comments About Role

Translation of the gag protein is studied by transfection of the protein into cultured cells.

(Kim et al., 1993)

The largest 1731\gag polypeptides are present in the virus-like particles extracted from a D.melanogaster cell line, and a short 1731\gag polypeptide is associated to the cell nucleus.

(Haoudi et al., 1995)

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q6KEU0

Other Crossreferences

Linkouts

Synonyms & Secondary IDs ( 3 )

Reported As

Symbol Synonym

1731\gag

ORF1

(Kalmykova et al., 1999, Haoudi et al., 1995, Maisonhaute et al., 2007)

Name Synonym

1731 element gag

(Haoudi et al., 1995)

Secondary FlyBase IDs

References ( 4 )

Research paper

Maisonhaute et al., 2007, Gene 393(1-2): 116--126: Amplification of the 1731 LTR retrotransposon in Drosophila melanogaster cultured cells: origin of neocopies and impact on the genome. [FBrf0200843]
Kalmykova et al., 1999, Genetica 107(1-3): 73--77: Retrotransposon 1731 in Drosophila melanogaster changes retrovirus-like expression strategy in host genome. [FBrf0129880]
Haoudi et al., 1995, FEBS Lett. 377(1): 67--72: The Gag polypeptides of the Drosophila 1731 retrotransposon are associated to virus-like particles and to nuclei. [FBrf0085174]
Kim et al., 1993, FEBS Lett. 328(1-2): 183--188: Translation and fates of the gag protein of 1731, a Drosophila melanogaster retrotransposon. [FBrf0058493]