BLAST Database information

Database availability

Species	Genome assembly	Annotated genes	Annotated proteins	GLEANR CDS predictions	GLEANR protein predictions	Intergenic sequences	Syntenic blocks
Drosophila melanogaster	Yes	Yes	Yes	No	No	Yes	No
Drosophila simulans	Yes	Yes	Yes	No	No	Yes	No
Drosophila sechellia	Yes	Yes	Yes	No	No	Yes	No
Drosophila yakuba	Yes	Yes	Yes	No	No	Yes	No
Drosophila erecta	Yes	Yes	Yes	No	No	Yes	No
Drosophila ananassae	Yes	Yes	Yes	No	No	Yes	No
Drosophila pseudoobscura pseudoobscura	Yes	Yes	Yes	No	No	Yes	Yes
Drosophila persimilis	Yes	Yes	Yes	No	No	Yes	No
Drosophila willistoni	Yes	Yes	Yes	No	No	Yes	No
Drosophila mojavensis	Yes	Yes	Yes	No	No	Yes	No
Drosophila virilis	Yes	Yes	Yes	No	No	Yes	No
Drosophila grimshawi	Yes	Yes	Yes	No	No	Yes	No
Culex pipiens quinquefasciatus	Yes	No	No	No	No	No	No
Aedes aegypti	Yes	No	No	No	No	No	No
Anopheles gambiae	Yes	No	No	No	No	No	No
Bombyx mori	Yes	No	No	No	No	No	No
Tribolium castaneum	Yes	No	No	No	No	No	No
Apis mellifera	Yes	No	No	No	No	No	No
Nasonia vitripennis	Yes	No	No	No	No	No	No
Pediculus humanus corporis	Yes	No	No	No	No	No	No

Species	Transposons - all annotated elements	Transposons - canonical set	Degenerate scaffolds	GenBank sequences	GenBank EST sequences	GenBank GSS sequences	GenBank protein sequences
Drosophila melanogaster	Yes	Yes	Yes	Yes	Yes	Yes	Yes
Drosophila simulans	No	Yes	No	Yes	Yes	Yes	Yes
Drosophila sechellia	No	No	No	Yes	No	Yes	Yes
Drosophila yakuba	No	Yes	No	Yes	Yes	Yes	Yes
Drosophila erecta	No	No	No	Yes	Yes	Yes	Yes
Drosophila ananassae	No	Yes	No	Yes	Yes	Yes	Yes
Drosophila pseudoobscura pseudoobscura	No	Yes	No	Yes	Yes	Yes	Yes
Drosophila persimilis	No	No	No	Yes	No	Yes	Yes
Drosophila willistoni	No	Yes	No	Yes	Yes	Yes	Yes
Drosophila mojavensis	No	No	No	Yes	Yes	Yes	Yes
Drosophila virilis	No	Yes	No	Yes	Yes	Yes	Yes
Drosophila grimshawi	No	No	No	Yes	Yes	Yes	Yes
Culex pipiens quinquefasciatus	No	No	No	Yes	Yes	No	Yes
Aedes aegypti	No	No	No	Yes	Yes	Yes	Yes
Anopheles gambiae	No	No	No	Yes	Yes	Yes	Yes
Bombyx mori	No	No	No	Yes	Yes	Yes	Yes
Tribolium castaneum	No	No	No	Yes	Yes	Yes	Yes
Apis mellifera	No	No	No	Yes	Yes	Yes	Yes
Nasonia vitripennis	No	No	No	Yes	Yes	No	Yes
Pediculus humanus corporis	No	No	No	Yes	Yes	No	Yes

Database descriptions

Database	Type	Description
Genome assembly	nucleotide	Largest assembled unit
Annotated genes	nucleotide	FlyBase annotated genes
Annotated proteins	protein	FlyBase annotated proteins
GLEANR CDS predictions	nucleotide	GLEANR CDS predictions from the AAA group. This database will be folded into "Annotated genes" for each Drosophila species once FlyBase has integrated all the annotations. Check the availability table above for the current status or Contact FlyBase if you have further questions.
GLEANR protein predictions	protein	GLEANR protein predictions from the AAA group. This database will be folded into "Annotated proteins" for each Drosophila species once FlyBase has integrated all the annotations. Check the availability table above for the current status or Contact FlyBase if you have further questions.
Intergenic sequences	nucleotide	Intergenic sequences derived from the coordinates of FlyBase gene models.
Syntenic blocks	nucleotide	Regions/blocks of synteny between the species the database is listed under and another species, usually Dmel.
Transposons - all annotated elements	nucleotide	Any transposons annoated by FlyBase.
Transposons - canonical set	nucleotide	A consensus set of transposons derived from transposon_sequence_set.embl.txt.gz
Degenerate scaffolds	nucleotide	Scaffolds that can be neither oriented or located on a particular chromosome for a variety of reasons.
GenBank	nucleotide	All GenBank sequences from the Core Nucleotide database for the species.
GenBank EST	nucleotide	All GenBank sequences from the EST division for the species.
GenBank GSS	nucleotide	All GenBank sequences from the GSS division for the species.
GenBank protein	protein	All GenBank protein sequences for the species.
UniProt	protein	No longer available.